Fiona McCarthy

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 7	2017

Other Publications

Article	Year
Construction and manipulation of an infectious clone of the bovine herpesvirus 1 genome maintained as a bacterial artificial chromosome. Journal of virology\| PubMed ID: 12050379	2002
Rapid and efficient construction of recombinant bovine herpesvirus 1 genomes. Journal of virological methods\| PubMed ID: 12505643	2003
Construction of a gene inactivation library for Bovine herpesvirus 1 using infectious clone technology. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 15507722	2005
Genetic analysis of bovine viral diarrhoea viruses from Australia. Veterinary microbiology\| PubMed ID: 15737468	2005
Differential detergent fractionation for non-electrophoretic eukaryote cell proteomics. Journal of proteome research\| PubMed ID: 15822906	2005
Modeling a whole organ using proteomics: the avian bursa of Fabricius. Proteomics\| PubMed ID: 16596704	2006
AgBase: a functional genomics resource for agriculture. BMC genomics\| PubMed ID: 16961921	2006
AgBase: a unified resource for functional analysis in agriculture. Nucleic acids research\| PubMed ID: 17135208	2007
Non-electrophoretic differential detergent fractionation proteomics using frozen whole organs. Rapid communications in mass spectrometry : RCM\| PubMed ID: 17990261	2007
Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome. BMC genomics\| PubMed ID: 18021451	2007
Prediction of peptides observable by mass spectrometry applied at the experimental set level. BMC bioinformatics\| PubMed ID: 18047723	2007
Gene Ontology annotation quality analysis in model eukaryotes. Nucleic acids research\| PubMed ID: 18187504	2008
The essential and non-essential genes of Bovine herpesvirus 1. The Journal of general virology\| PubMed ID: 18931083	2008
Sequential detergent extraction prior to mass spectrometry analysis. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 19153687	2009
ArrayIDer: automated structural re-annotation pipeline for DNA microarrays. BMC bioinformatics\| PubMed ID: 19166590	2009
Understanding animal viruses using the Gene Ontology. Trends in microbiology\| PubMed ID: 19577474	2009
Introduction to the proceedings of the Avian Genomics and Gene Ontology Annotation Workshop. BMC genomics\| PubMed ID: 19607650	2009
The Chicken Gene Nomenclature Committee report. BMC genomics\| PubMed ID: 19607656	2009
Facilitating functional annotation of chicken microarray data. BMC bioinformatics\| PubMed ID: 19811685	2009
Structural and functional-annotation of an equine whole genome oligoarray. BMC bioinformatics\| PubMed ID: 19811692	2009
Transcriptional and pathway analysis in the hypothalamus of newly hatched chicks during fasting and delayed feeding. BMC genomics\| PubMed ID: 20214824	2010
Re-annotation is an essential step in systems biology modeling of functional genomics data. PloS one\| PubMed ID: 20498845	2010
Proteome profile of the developing maize (Zea mays L.) rachis. Proteomics\| PubMed ID: 20662101	2010
GOModeler--a tool for hypothesis-testing of functional genomics datasets. BMC bioinformatics\| PubMed ID: 20946613	2010
Analysis of Bovine Viral Diarrhea Viruses-infected monocytes: identification of cytopathic and non-cytopathic biotype differences. BMC bioinformatics\| PubMed ID: 20946620	2010
AgBase: supporting functional modeling in agricultural organisms. Nucleic acids research\| PubMed ID: 21075795	2011
The proteogenomic mapping tool. BMC bioinformatics\| PubMed ID: 21513508	2011
Systemic response to Campylobacter jejuni infection by profiling gene transcription in the spleens of two genetic lines of chickens. Immunogenetics\| PubMed ID: 21748442	2012
Transcriptome-based differentiation of closely-related Miscanthus lines. PloS one\| PubMed ID: 22253803	2012
Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome biology\| PubMed ID: 22293439	2012
Cross-Ontology multi-level association rule mining in the Gene Ontology. PloS one\| PubMed ID: 23071802	2012
Developing a biocuration workflow for AgBase, a non-model organism database. Database : the journal of biological databases and curation\| PubMed ID: 23160411	2012
Stallion sperm transcriptome comprises functionally coherent coding and regulatory RNAs as revealed by microarray analysis and RNA-seq. PloS one\| PubMed ID: 23409192	2013
Current clinical immunotherapy targets in advanced nonsmall cell lung cancer (NSCLC). Journal of leukocyte biology\| PubMed ID: 23695306	2013
Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO relationships. Journal of biomedical informatics\| PubMed ID: 23850840	2013
Inflammatory cytokines in human pancreatic cancer. Cancer letters\| PubMed ID: 23879960	2014
De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum. PloS one\| PubMed ID: 24821410	2014
Transgenic soya bean seeds accumulating β-carotene exhibit the collateral enhancements of oleate and protein content traits. Plant biotechnology journal\| PubMed ID: 25400247	2015
Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC. PloS one\| PubMed ID: 25503521	2014
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.)\| PubMed ID: 25504731	2014
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome biology\| PubMed ID: 25854118	2015
Transcriptome response to heat stress in a chicken hepatocellular carcinoma cell line. Cell stress & chaperones\| PubMed ID: 26238561	2015
Third Report on Chicken Genes and Chromosomes 2015. Cytogenetic and genome research\| PubMed ID: 26282327	2015
Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates. Frontiers in neuroscience\| PubMed ID: 26500483	2015
HPIDB 2.0: a curated database for host-pathogen interactions. Database : the journal of biological databases and curation\| PubMed ID: 27374121	2016
Resources and Recommendations for Using Transcriptomics to Address Grand Challenges in Comparative Biology. Integrative and comparative biology\| PubMed ID: 27639274	2016
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling. Genome research\| PubMed ID: 28137821	2017
RNA Sequencing Exposes Adaptive and Immune Responses to Intrauterine Growth Restriction in Fetal Sheep Islets. Endocrinology\| PubMed ID: 28200173	2017
Acute Ischemia Induced by High Density Culture Increases Cytokine Expression and Diminishes the Function and Viability of Highly Purified Human Islets of Langerhans. Transplantation\| PubMed ID: 28263224	2017