Judith Berman

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 6	2017

Other Publications

Article	Year
MEC3, MEC1, and DDC2 are essential components of a telomere checkpoint pathway required for cell cycle arrest during senescence in Saccharomyces cerevisiae. Molecular biology of the cell\| PubMed ID: 12181334	2002
A forkhead transcription factor is important for true hyphal as well as yeast morphogenesis in Candida albicans. Eukaryotic cell\| PubMed ID: 12455696	2002
Candida Albicans: a molecular revolution built on lessons from budding yeast. Nature reviews. Genetics\| PubMed ID: 12459722	2002
mRNAs encoding telomerase components and regulators are controlled by UPF genes in Saccharomyces cerevisiae. Eukaryotic cell\| PubMed ID: 12582130	2003
The effects of dehydration on rehabilitation outcomes of elderly orthopedic patients. Archives of physical medicine and rehabilitation\| PubMed ID: 12589621	2003
Molecular genetic and genomic approaches to the study of medically important fungi. Infection and immunity\| PubMed ID: 12704098	2003
Functional conservation of Dhh1p, a cytoplasmic DExD/H-box protein present in large complexes. Nucleic acids research\| PubMed ID: 12930949	2003
Telomere cap components influence the rate of senescence in telomerase-deficient yeast cells. Molecular and cellular biology\| PubMed ID: 14701754	2004
Cassettes for the PCR-mediated construction of regulatable alleles in Candida albicans. Yeast (Chichester, England)\| PubMed ID: 15116343	2004
The distinct morphogenic states of Candida albicans. Trends in microbiology\| PubMed ID: 15223059	2004
Yeast chromatin assembly complex 1 protein excludes nonacetylatable forms of histone H4 from chromatin and the nucleus. Molecular and cellular biology\| PubMed ID: 15542829	2004
Transcriptional profiling in Candida albicans reveals new adaptive responses to extracellular pH and functions for Rim101p. Molecular microbiology\| PubMed ID: 15554973	2004
Comparative genome hybridization reveals widespread aneuploidy in Candida albicans laboratory strains. Molecular microbiology\| PubMed ID: 15720560	2005
The mitotic cyclins Clb2p and Clb4p affect morphogenesis in Candida albicans. Molecular biology of the cell\| PubMed ID: 15888543	2005
Candida albicans hyphae have a Spitzenkörper that is distinct from the polarisome found in yeast and pseudohyphae. Journal of cell science\| PubMed ID: 15976451	2005
Rewiring of the yeast transcriptional network through the evolution of motif usage. Science (New York, N.Y.)\| PubMed ID: 16081737	2005
A human-curated annotation of the Candida albicans genome. PLoS genetics\| PubMed ID: 16103911	2005
Microtubules in Candida albicans hyphae drive nuclear dynamics and connect cell cycle progression to morphogenesis. Eukaryotic cell\| PubMed ID: 16215177	2005
A mutation in Tac1p, a transcription factor regulating CDR1 and CDR2, is coupled with loss of heterozygosity at chromosome 5 to mediate antifungal resistance in Candida albicans. Genetics\| PubMed ID: 16452151	2006
Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program. PLoS genetics\| PubMed ID: 16470937	2005
Aneuploidy and isochromosome formation in drug-resistant Candida albicans. Science (New York, N.Y.)\| PubMed ID: 16857942	2006
Transcript profiles of Candida albicans cortical actin patch mutants reflect their cellular defects: contribution of the Hog1p and Mkc1p signaling pathways. Eukaryotic cell\| PubMed ID: 16896210	2006
Morphogenesis and cell cycle progression in Candida albicans. Current opinion in microbiology\| PubMed ID: 17055773	2006
The pattern and evolution of yeast promoter bendability. Trends in genetics : TIG\| PubMed ID: 17418911	2007
Genotypic evolution of azole resistance mechanisms in sequential Candida albicans isolates. Eukaryotic cell\| PubMed ID: 17693596	2007
Haplotype mapping of a diploid non-meiotic organism using existing and induced aneuploidies. PLoS genetics\| PubMed ID: 18179283	2008
Dynein-dependent nuclear dynamics affect morphogenesis in Candida albicans by means of the Bub2p spindle checkpoint. Journal of cell science\| PubMed ID: 18211963	2008
An isochromosome confers drug resistance in vivo by amplification of two genes, ERG11 and TAC1. Molecular microbiology\| PubMed ID: 18363649	2008
The parasexual cycle in Candida albicans provides an alternative pathway to meiosis for the formation of recombinant strains. PLoS biology\| PubMed ID: 18462019	2008
Molecular architecture of the kinetochore-microtubule attachment site is conserved between point and regional centromeres. The Journal of cell biology\| PubMed ID: 18474626	2008
Neocentromeres form efficiently at multiple possible loci in Candida albicans. PLoS genetics\| PubMed ID: 19266018	2009
Evolution in Candida albicans populations during a single passage through a mouse host. Genetics\| PubMed ID: 19414562	2009
Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature\| PubMed ID: 19465905	2009
Additional cassettes for epitope and fluorescent fusion proteins in Candida albicans. Yeast (Chichester, England)\| PubMed ID: 19504625	2009
Efficient and rapid identification of Candida albicans allelic status using SNP-RFLP. FEMS yeast research\| PubMed ID: 19622074	2009
Aneuploid chromosomes are highly unstable during DNA transformation of Candida albicans. Eukaryotic cell\| PubMed ID: 19700634	2009
SLA2 mutations cause SWE1-mediated cell cycle phenotypes in Candida albicans and Saccharomyces cerevisiae. Microbiology (Reading, England)\| PubMed ID: 19778960	2009
Acquisition of aneuploidy provides increased fitness during the evolution of antifungal drug resistance. PLoS genetics\| PubMed ID: 19876375	2009
Growth and development: eukaryotes. Current opinion in microbiology\| PubMed ID: 19889571	2009
Dancing genomes: fungal nuclear positioning. Nature reviews. Microbiology\| PubMed ID: 19898490	2009
Genomic plasticity of the human fungal pathogen Candida albicans. Eukaryotic cell\| PubMed ID: 20495058	2010
Low dosage of histone H4 leads to growth defects and morphological changes in Candida albicans. PloS one\| PubMed ID: 20498713	2010
Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase. PLoS genetics\| PubMed ID: 20808889	2010
Evolutionary genomics: When abnormality is beneficial. Nature\| PubMed ID: 21068824	2010
CaMtw1, a member of the evolutionarily conserved Mis12 kinetochore protein family, is required for efficient inner kinetochore assembly in the pathogenic yeast Candida albicans. Molecular microbiology\| PubMed ID: 21276093	2011
The requirement for the Dam1 complex is dependent upon the number of kinetochore proteins and microtubules. Current biology : CB\| PubMed ID: 21549601	2011
Skin-resident murine dendritic cell subsets promote distinct and opposing antigen-specific T helper cell responses. Immunity\| PubMed ID: 21782478	2011
Evolutionary dynamics of Candida albicans during in vitro evolution. Eukaryotic cell\| PubMed ID: 21890821	2011
Does stress induce (para)sex? Implications for Candida albicans evolution. Trends in genetics : TIG\| PubMed ID: 22364928	2012
High-Resolution SNP/CGH Microarrays Reveal the Accumulation of Loss of Heterozygosity in Commonly Used Candida albicans Strains. G3 (Bethesda, Md.)\| PubMed ID: 22384363	2011
Flexibility of centromere and kinetochore structures. Trends in genetics : TIG\| PubMed ID: 22445183	2012
Neocentromeres and epigenetically inherited features of centromeres. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology\| PubMed ID: 22723125	2012
Analysis of protein function in clinical C. albicans isolates. Yeast (Chichester, England)\| PubMed ID: 22777821	2012
Cell-cycle-coupled structural oscillation of centromeric nucleosomes in yeast. Cell\| PubMed ID: 22817893	2012
Candida albicans. Current biology : CB\| PubMed ID: 22917504	2012
The three clades of the telomere-associated TLO gene family of Candida albicans have different splicing, localization, and expression features. Eukaryotic cell\| PubMed ID: 22923044	2012
Shuttle vectors for facile gap repair cloning and integration into a neutral locus in Candida albicans. Microbiology (Reading, England)\| PubMed ID: 23306673	2013
The 'obligate diploid' Candida albicans forms mating-competent haploids. Nature\| PubMed ID: 23364695	2013
Monopolin recruits condensin to organize centromere DNA and repetitive DNA sequences. Molecular biology of the cell\| PubMed ID: 23885115	2013
A tetraploid intermediate precedes aneuploid formation in yeasts exposed to fluconazole. PLoS biology\| PubMed ID: 24642609	2014
Silencing is noisy: population and cell level noise in telomere-adjacent genes is dependent on telomere position and sir2. PLoS genetics\| PubMed ID: 25057900	2014
Rapid mechanisms for generating genome diversity: whole ploidy shifts, aneuploidy, and loss of heterozygosity. Cold Spring Harbor perspectives in medicine\| PubMed ID: 25081629	2014
Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres. mBio\| PubMed ID: 25182328	2014
Telomeric ORFs (TLOs) in Candida spp. Encode mediator subunits that regulate distinct virulence traits. PLoS genetics\| PubMed ID: 25356803	2014
Genetic and phenotypic intra-species variation in Candida albicans. Genome research\| PubMed ID: 25504520	2015
YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens. Genome medicine\| PubMed ID: 25505934	2014
The evolution of drug resistance in clinical isolates of Candida albicans. eLife\| PubMed ID: 25646566	2015
Telomeric ORFS in Candida albicans: does mediator tail wag the yeast? PLoS pathogens\| PubMed ID: 25675446	2015
Targeting the adaptability of heterogeneous aneuploids. Cell\| PubMed ID: 25679766	2015
Candida albicans morphology and dendritic cell subsets determine T helper cell differentiation. Immunity\| PubMed ID: 25680275	2015
Real-Time Evolution of a Subtelomeric Gene Family in Candida albicans. Genetics\| PubMed ID: 25956943	2015
Parasexual Ploidy Reduction Drives Population Heterogeneity Through Random and Transient Aneuploidy in Candida albicans. Genetics\| PubMed ID: 25991822	2015
Shift and adapt: the costs and benefits of karyotype variations. Current opinion in microbiology\| PubMed ID: 26321163	2015
Physical limits on kinesin-5-mediated chromosome congression in the smallest mitotic spindles. Molecular biology of the cell\| PubMed ID: 26354423	2015
Polyploid titan cells produce haploid and aneuploid progeny to promote stress adaptation. mBio\| PubMed ID: 26463162	2015
Corrigendum: The 'obligate diploid' Candida albicans forms mating-competent haploids. Nature\| PubMed ID: 26580011	2016
High frame-rate resolution of cell division during Candida albicans filamentation. Fungal genetics and biology : FG & B\| PubMed ID: 26854071	2016
Ploidy plasticity: a rapid and reversible strategy for adaptation to stress. FEMS yeast research\| PubMed ID: 26945893	2016
Candida albicans repetitive elements display epigenetic diversity and plasticity. Scientific reports\| PubMed ID: 26971880	2016
diskImageR: quantification of resistance and tolerance to antimicrobial drugs using disk diffusion assays. Microbiology (Reading, England)\| PubMed ID: 27126388	2016
Phenotypic Consequences of a Spontaneous Loss of Heterozygosity in a Common Laboratory Strain of Candida albicans. Genetics\| PubMed ID: 27206717	2016
Sir2 regulates stability of repetitive domains differentially in the human fungal pathogen Candida albicans. Nucleic acids research\| PubMed ID: 27369382	2016
Heteroresistance to Fluconazole Is a Continuously Distributed Phenotype among Candida glabrata Clinical Strains Associated with In Vivo Persistence. mBio\| PubMed ID: 27486188	2016
Neocentromeres Provide Chromosome Segregation Accuracy and Centromere Clustering to Multiple Loci along a Candida albicans Chromosome. PLoS genetics\| PubMed ID: 27662467	2016
Ploidy dynamics and evolvability in fungi. Philosophical transactions of the Royal Society of London. Series B, Biological sciences\| PubMed ID: 28080987	2016
Multidrug-Resistant Candida haemulonii and C. auris, Tel Aviv, Israel. Emerging infectious diseases\| PubMed ID: 28098529	2017
Haplotyping a Non-meiotic Diploid Fungal Pathogen Using Induced Aneuploidies and SNP/CGH Microarray Analysis. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 28138844	2017
Ploidy tug-of-war: evolutionary and genetic environments influence the rate of ploidy drive in a human fungal pathogen. Evolution; international journal of organic evolution\| PubMed ID: 28195309	2017