Boris Lenhard

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 5	2019

Other Publications

Article	Year
Making enhancers from spare parts of the genome. Genome biology\| PubMed ID: 22206586	2011
Metazoan promoters: emerging characteristics and insights into transcriptional regulation. Nature reviews. Genetics\| PubMed ID: 22392219	2012
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22451944	2012
A novel complex, RUNX1-MYEF2, represses hematopoietic genes in erythroid cells. Molecular and cellular biology\| PubMed ID: 22801375	2012
OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica. Nucleic acids research\| PubMed ID: 23185044	2013
Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions. Genome research\| PubMed ID: 23482648	2013
r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data. Nucleic acids research\| PubMed ID: 23671339	2013
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments. Genome research\| PubMed ID: 24002784	2013
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic acids research\| PubMed ID: 24194598	2014
The mystery of extreme non-coding conservation. Philosophical transactions of the Royal Society of London. Series B, Biological sciences\| PubMed ID: 24218634	2013
Two independent transcription initiation codes overlap on vertebrate core promoters. Nature\| PubMed ID: 24531765	2014
Computational characterization of modes of transcriptional regulation of nuclear receptor genes. PloS one\| PubMed ID: 24551185	2014
HBS1L-MYB intergenic variants modulate fetal hemoglobin via long-range MYB enhancers. The Journal of clinical investigation\| PubMed ID: 24614105	2014
Trans-splicing and operons in metazoans: translational control in maternally regulated development and recovery from growth arrest. Molecular biology and evolution\| PubMed ID: 25525214	2015
CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses. Nucleic acids research\| PubMed ID: 25653163	2015
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin. Genome research\| PubMed ID: 25677180	2015
Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome. Nature communications\| PubMed ID: 25908307	2015
Copy number variants in patients with intellectual disability affect the regulation of ARX transcription factor gene. Human genetics\| PubMed ID: 26337422	2015
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic acids research\| PubMed ID: 26531826	2016
GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data. BMC genomics\| PubMed ID: 26576536	2015
Control of developmentally primed erythroid genes by combinatorial co-repressor actions. Nature communications\| PubMed ID: 26593974	2015
Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs. Nucleic acids research\| PubMed ID: 26673698	2016
Targeting Aberrant Epigenetic Networks Mediated by PRMT1 and KDM4C in Acute Myeloid Leukemia. Cancer cell\| PubMed ID: 26766589	2016
Promoter architectures and developmental gene regulation. Seminars in cell & developmental biology\| PubMed ID: 26783721	2016
TFBSTools: an R/bioconductor package for transcription factor binding site analysis. Bioinformatics (Oxford, England)\| PubMed ID: 26794315	2016
Naturally Occurring Isoleucyl-tRNA Synthetase without tRNA-dependent Pre-transfer Editing. The Journal of biological chemistry\| PubMed ID: 26921320	2016
Allele-specific analysis of cell fusion-mediated pluripotent reprograming reveals distinct and predictive susceptibilities of human X-linked genes to reactivation. Genome biology\| PubMed ID: 28118853	2017
Core promoters across the genome. Nature biotechnology\| PubMed ID: 28178253	2017
Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation. Nature communications\| PubMed ID: 28874668	2017
Transcriptional memory of cells of origin overrides β-catenin requirement of MLL cancer stem cells. The EMBO journal\| PubMed ID: 28978671	2017
Conserved non-coding elements: developmental gene regulation meets genome organization. Nucleic acids research\| PubMed ID: 29121339	2017
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic acids research\| PubMed ID: 29140473	2018
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic acids research\| PubMed ID: 29161433	2018
Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate. BMC genomics\| PubMed ID: 29482522	2018
Epigenetic reprogramming enables the transition from primordial germ cell to gonocyte. Nature\| PubMed ID: 29513657	2018
Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome. Genome research\| PubMed ID: 29618487	2018
BCL11B mutations in patients affected by a neurodevelopmental disorder with reduced type 2 innate lymphoid cells. Brain : a journal of neurology\| PubMed ID: 29985992	2018
Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation. Nature immunology\| PubMed ID: 30127433	2018
SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA. Genome research\| PubMed ID: 30404778	2018
Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature\| PubMed ID: 30464347	2018
A Novel Measure of Non-coding Genome Conservation Identifies Genomic Regulatory Blocks Within Primates. Bioinformatics (Oxford, England)\| PubMed ID: 30535005	2018
Saccharomyces cerevisiae displays a stable transcription start site landscape in multiple conditions. FEMS yeast research\| PubMed ID: 30590648	2019
DNA stretching induces Cas9 off-target activity. Nature structural & molecular biology\| PubMed ID: 30804513	2019
Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation. PLoS biology\| PubMed ID: 30978178	2019
Computation Resources for Molecular Biology: Special Issue 2019. Journal of molecular biology\| PubMed ID: 31152744	2019