Table of Contents

Archive: Issue 96, February 2015

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Behavior(7)
Bioengineering(5)
Biology(12)
Chemistry(2)
Developmental Biology(12)
Engineering(2)
Environment(3)
Immunology and Infection(7)
Medicine(20)
Neuroscience(6)
Protocol for Studying Extinction of Conditioned Fear in Naturally Cycling Female Rats

Protocol for Studying Extinction of Conditioned Fear in Naturally Cycling Female Rats

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Journal (Behavior)

Methods to Test Visual Attention Online

Methods to Test Visual Attention Online

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Journal (Behavior)

Operant Procedures for Assessing Behavioral Flexibility in Rats

Operant Procedures for Assessing Behavioral Flexibility in Rats

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Journal (Behavior)

Modulating Cognition Using Transcranial Direct Current Stimulation of the Cerebellum

Modulating Cognition Using Transcranial Direct Current Stimulation of the Cerebellum

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Journal (Behavior)

Use of the Open Field Maze to Measure Locomotor and Anxiety-like Behavior in Mice

Use of the Open Field Maze to Measure Locomotor and Anxiety-like Behavior in Mice

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Journal (Behavior)

Generation of a Three-dimensional Full Thickness Skin Equivalent and Automated Wounding

Generation of a Three-dimensional Full Thickness Skin Equivalent and Automated Wounding

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Journal (Bioengineering)

Using Cell-substrate Impedance and Live Cell Imaging to Measure Real-time Changes in Cellular Adhesion and De-adhesion Induced by Matrix Modification

Using Cell-substrate Impedance and Live Cell Imaging to Measure Real-time Changes in Cellular Adhesion and De-adhesion Induced by Matrix Modification

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Journal (Bioengineering)

A Method for Selecting Structure-switching Aptamers Applied to a Colorimetric Gold Nanoparticle Assay

A Method for Selecting Structure-switching Aptamers Applied to a Colorimetric Gold Nanoparticle Assay

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Journal (Biology)

A Multi-detection Assay for Malaria Transmitting Mosquitoes

A Multi-detection Assay for Malaria Transmitting Mosquitoes

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Journal (Biology)

Targeted DNA Methylation Analysis by Next-generation Sequencing

Targeted DNA Methylation Analysis by Next-generation Sequencing

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Journal (Biology)

Enhanced Reduced Representation Bisulfite Sequencing for Assessment of DNA Methylation at Base Pair Resolution

Enhanced Reduced Representation Bisulfite Sequencing for Assessment of DNA Methylation at Base Pair Resolution

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Journal (Biology)

Array Comparative Genomic Hybridization (Array CGH) for Detection of Genomic Copy Number Variants

Array Comparative Genomic Hybridization (Array CGH) for Detection of Genomic Copy Number Variants

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Journal (Biology)

Evaluation of Zebrafish Kidney Function Using a Fluorescent Clearance Assay

Evaluation of Zebrafish Kidney Function Using a Fluorescent Clearance Assay

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Journal (Biology)

Growth-based Determination and Biochemical Confirmation of Genetic Requirements for Protein Degradation in <em>Saccharomyces cerevisiae</em>

Growth-based Determination and Biochemical Confirmation of Genetic Requirements for Protein Degradation in Saccharomyces cerevisiae

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Journal (Biology)

Strategies for Tracking Anastasis, A Cell Survival Phenomenon that Reverses Apoptosis

Strategies for Tracking Anastasis, A Cell Survival Phenomenon that Reverses Apoptosis

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Journal (Biology)

Metal-free Synthesis of Ynones from Acyl Chlorides and Potassium Alkynyltrifluoroborate Salts

Metal-free Synthesis of Ynones from Acyl Chlorides and Potassium Alkynyltrifluoroborate Salts

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Journal (Chemistry)

Genome-wide Snapshot of Chromatin Regulators and States in <em>Xenopus</em> Embryos by ChIP-Seq

Genome-wide Snapshot of Chromatin Regulators and States in Xenopus Embryos by ChIP-Seq

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Journal (Developmental Biology)

Zebrafish Keratocyte Explants to Study Collective Cell Migration and Reepithelialization in Cutaneous Wound Healing

Zebrafish Keratocyte Explants to Study Collective Cell Migration and Reepithelialization in Cutaneous Wound Healing

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Journal (Developmental Biology)

Comprehensive Assessment of Germline Chemical Toxicity Using the Nematode <em>Caenorhabditis elegans</em>

Comprehensive Assessment of Germline Chemical Toxicity Using the Nematode Caenorhabditis elegans

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Journal (Developmental Biology)

Generation of Murine Cardiac Pacemaker Cell Aggregates Based on ES-Cell-Programming in Combination with Myh6-Promoter-Selection

Generation of Murine Cardiac Pacemaker Cell Aggregates Based on ES-Cell-Programming in Combination with Myh6-Promoter-Selection

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Journal (Developmental Biology)

Mechanical Vessel Injury in Zebrafish Embryos

Mechanical Vessel Injury in Zebrafish Embryos

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Journal (Developmental Biology)

An Optogenetic Approach for Assessing Formation of Neuronal Connections in a Co-culture System

An Optogenetic Approach for Assessing Formation of Neuronal Connections in a Co-culture System

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Journal (Developmental Biology)

Investigating Single Molecule Adhesion by Atomic Force Spectroscopy

Investigating Single Molecule Adhesion by Atomic Force Spectroscopy

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Journal (Engineering)

Reservoir Condition Pore-scale Imaging of Multiple Fluid Phases Using X-ray Microtomography

Reservoir Condition Pore-scale Imaging of Multiple Fluid Phases Using X-ray Microtomography

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Journal (Engineering)

Tracking Mouse Bone Marrow Monocytes <em>In Vivo</em>

Tracking Mouse Bone Marrow Monocytes In Vivo

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Journal (Immunology and Infection)

Generation of Lymphocytic Microparticles and Detection of their Proapoptotic Effect on Airway Epithelial Cells

Generation of Lymphocytic Microparticles and Detection of their Proapoptotic Effect on Airway Epithelial Cells

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Journal (Immunology and Infection)

Loop-mediated Isothermal Amplification (LAMP) Assays for the Species-specific Detection of <em>Eimeria</em> that Infect Chickens

Loop-mediated Isothermal Amplification (LAMP) Assays for the Species-specific Detection of Eimeria that Infect Chickens

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Journal (Immunology and Infection)

Generation of CAR T Cells for Adoptive Therapy in the Context of Glioblastoma Standard of Care

Generation of CAR T Cells for Adoptive Therapy in the Context of Glioblastoma Standard of Care

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Journal (Immunology and Infection)

Quantitative Mass Spectrometric Profiling of Cancer-cell Proteomes Derived From Liquid and Solid Tumors

Quantitative Mass Spectrometric Profiling of Cancer-cell Proteomes Derived From Liquid and Solid Tumors

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Journal (Medicine)

Method of Isolated <em>Ex Vivo</em> Lung Perfusion in a Rat Model: Lessons Learned from Developing a Rat EVLP Program

Method of Isolated Ex Vivo Lung Perfusion in a Rat Model: Lessons Learned from Developing a Rat EVLP Program

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Journal (Medicine)

Facial Nerve Axotomy in Mice: A Model to Study Motoneuron Response to Injury

Facial Nerve Axotomy in Mice: A Model to Study Motoneuron Response to Injury

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Journal (Medicine)

Synergetic Use of Neural Precursor Cells and Self-assembling Peptides in Experimental Cervical Spinal Cord Injury

Synergetic Use of Neural Precursor Cells and Self-assembling Peptides in Experimental Cervical Spinal Cord Injury

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Journal (Medicine)

Transposon Mediated Integration of Plasmid DNA into the Subventricular Zone of Neonatal Mice to Generate Novel Models of Glioblastoma

Transposon Mediated Integration of Plasmid DNA into the Subventricular Zone of Neonatal Mice to Generate Novel Models of Glioblastoma

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Journal (Medicine)

A Guide to Generating and Using hiPSC Derived NPCs for the Study of Neurological Diseases

A Guide to Generating and Using hiPSC Derived NPCs for the Study of Neurological Diseases

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Journal (Medicine)

Th17 Inflammation Model of Oropharyngeal Candidiasis in Immunodeficient Mice

Th17 Inflammation Model of Oropharyngeal Candidiasis in Immunodeficient Mice

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Journal (Medicine)

<em>In vitro</em> Enrichment of Ovarian Cancer Tumor-initiating Cells

In vitro Enrichment of Ovarian Cancer Tumor-initiating Cells

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Journal (Medicine)

Human Brown Adipose Tissue Depots Automatically Segmented by Positron Emission Tomography/Computed Tomography and Registered Magnetic Resonance Images

Human Brown Adipose Tissue Depots Automatically Segmented by Positron Emission Tomography/Computed Tomography and Registered Magnetic Resonance Images

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Journal (Medicine)

Dorsal Root Ganglia Neurons and Differentiated Adipose-derived Stem Cells: An <em>In Vitro</em> Co-culture Model to Study Peripheral Nerve Regeneration

Dorsal Root Ganglia Neurons and Differentiated Adipose-derived Stem Cells: An In Vitro Co-culture Model to Study Peripheral Nerve Regeneration

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Journal (Neuroscience)

Two-photon Imaging of Cellular Dynamics in the Mouse Spinal Cord

Two-photon Imaging of Cellular Dynamics in the Mouse Spinal Cord

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Journal (Neuroscience)

Isolation, Culture and Long-Term Maintenance of Primary Mesencephalic Dopaminergic Neurons From Embryonic Rodent Brains

Isolation, Culture and Long-Term Maintenance of Primary Mesencephalic Dopaminergic Neurons From Embryonic Rodent Brains

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Journal (Neuroscience)

The Attentional Set Shifting Task: A Measure of Cognitive Flexibility in Mice

The Attentional Set Shifting Task: A Measure of Cognitive Flexibility in Mice

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Journal (Behavior)

Topographical Estimation of Visual Population Receptive Fields by fMRI

Topographical Estimation of Visual Population Receptive Fields by fMRI

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Journal (Behavior)

Novel Atomic Force Microscopy Based Biopanning for Isolation of Morphology Specific Reagents against TDP-43 Variants in Amyotrophic Lateral Sclerosis

Novel Atomic Force Microscopy Based Biopanning for Isolation of Morphology Specific Reagents against TDP-43 Variants in Amyotrophic Lateral Sclerosis

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Journal (Bioengineering)

Impact Assessment of Repeated Exposure of Organotypic 3D Bronchial and Nasal Tissue Culture Models to Whole Cigarette Smoke

Impact Assessment of Repeated Exposure of Organotypic 3D Bronchial and Nasal Tissue Culture Models to Whole Cigarette Smoke

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Journal (Bioengineering)

Harnessing the Bioorthogonal Inverse Electron Demand Diels-Alder Cycloaddition for Pretargeted PET Imaging

Harnessing the Bioorthogonal Inverse Electron Demand Diels-Alder Cycloaddition for Pretargeted PET Imaging

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Journal (Bioengineering)

Generation of Plasmid Vectors Expressing FLAG-tagged Proteins Under the Regulation of Human Elongation Factor-1&#945; Promoter Using Gibson Assembly

Generation of Plasmid Vectors Expressing FLAG-tagged Proteins Under the Regulation of Human Elongation Factor-1α Promoter Using Gibson Assembly

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Journal (Biology)

Internalization and Observation of Fluorescent Biomolecules in Living Microorganisms via Electroporation

Internalization and Observation of Fluorescent Biomolecules in Living Microorganisms via Electroporation

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Journal (Biology)

The Multifaceted Benefits of Protein Co-expression in <em>Escherichia coli</em>

The Multifaceted Benefits of Protein Co-expression in Escherichia coli

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Journal (Biology)

Analysis of Autophagy in <em>Penicillium chrysogenum</em> by Using Starvation Pads in Combination With Fluorescence Microscopy

Analysis of Autophagy in Penicillium chrysogenum by Using Starvation Pads in Combination With Fluorescence Microscopy

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Journal (Biology)

The Bioconjugation and Radiosynthesis of <sup>89</sup>Zr-DFO-labeled Antibodies

The Bioconjugation and Radiosynthesis of 89Zr-DFO-labeled Antibodies

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Journal (Chemistry)

Manipulation and <em>In Vitro</em> Maturation of <em>Xenopus laevis</em> Oocytes, Followed by Intracytoplasmic Sperm Injection, to Study Embryonic Development

Manipulation and In Vitro Maturation of Xenopus laevis Oocytes, Followed by Intracytoplasmic Sperm Injection, to Study Embryonic Development

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Journal (Developmental Biology)

Isolation of Human Mesenchymal Stem Cells and their Cultivation on the Porous Bone Matrix

Isolation of Human Mesenchymal Stem Cells and their Cultivation on the Porous Bone Matrix

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Journal (Developmental Biology)

<em>In Utero</em> Intra-cardiac Tomato-lectin Injections on Mouse Embryos to Gauge Renal Blood Flow

In Utero Intra-cardiac Tomato-lectin Injections on Mouse Embryos to Gauge Renal Blood Flow

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Journal (Developmental Biology)

Deriving Retinal Pigment Epithelium (RPE) from Induced Pluripotent Stem (iPS) Cells by Different Sizes of Embryoid Bodies

Deriving Retinal Pigment Epithelium (RPE) from Induced Pluripotent Stem (iPS) Cells by Different Sizes of Embryoid Bodies

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Journal (Developmental Biology)

Live Imaging of Innate Immune and Preneoplastic Cell Interactions Using an Inducible Gal4/UAS Expression System in Larval Zebrafish Skin

Live Imaging of Innate Immune and Preneoplastic Cell Interactions Using an Inducible Gal4/UAS Expression System in Larval Zebrafish Skin

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Journal (Developmental Biology)

Transfection, Selection, and Colony-picking of Human Induced Pluripotent Stem Cells TALEN-targeted with a GFP Gene into the AAVS1 Safe Harbor

Transfection, Selection, and Colony-picking of Human Induced Pluripotent Stem Cells TALEN-targeted with a GFP Gene into the AAVS1 Safe Harbor

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Journal (Developmental Biology)

Detection of Foodborne Bacterial Pathogens from Individual Filth Flies

Detection of Foodborne Bacterial Pathogens from Individual Filth Flies

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Journal (Environment)

Modifying the Bank Erosion Hazard Index (BEHI) Protocol for Rapid Assessment of Streambank Erosion in Northeastern Ohio

Modifying the Bank Erosion Hazard Index (BEHI) Protocol for Rapid Assessment of Streambank Erosion in Northeastern Ohio

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Journal (Environment)

A Small Volume Procedure for Viral Concentration from Water

A Small Volume Procedure for Viral Concentration from Water

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Journal (Environment)

Super-resolution Imaging of the Natural Killer Cell Immunological Synapse on a Glass-supported Planar Lipid Bilayer

Super-resolution Imaging of the Natural Killer Cell Immunological Synapse on a Glass-supported Planar Lipid Bilayer

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Journal (Immunology and Infection)

Radial Mobility and Cytotoxic Function of Retroviral Replicating Vector Transduced, Non-adherent Alloresponsive T Lymphocytes

Radial Mobility and Cytotoxic Function of Retroviral Replicating Vector Transduced, Non-adherent Alloresponsive T Lymphocytes

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Journal (Immunology and Infection)

An <em>Ex vivo</em> Model of an Oligodendrocyte-directed T-Cell Attack in Acute Brain Slices

An Ex vivo Model of an Oligodendrocyte-directed T-Cell Attack in Acute Brain Slices

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Journal (Immunology and Infection)

Techniques for Processing Eyes Implanted with a Retinal Prosthesis for Localized Histopathological Analysis: Part 2 Epiretinal Implants with Retinal Tacks

Techniques for Processing Eyes Implanted with a Retinal Prosthesis for Localized Histopathological Analysis: Part 2 Epiretinal Implants with Retinal Tacks

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Journal (Medicine)

Bile Duct Ligation in Mice: Induction of Inflammatory Liver Injury and Fibrosis by Obstructive Cholestasis

Bile Duct Ligation in Mice: Induction of Inflammatory Liver Injury and Fibrosis by Obstructive Cholestasis

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Journal (Medicine)

Murine Model of Femoral Artery Wire Injury with Implantation of a Perivascular Drug Delivery Patch

Murine Model of Femoral Artery Wire Injury with Implantation of a Perivascular Drug Delivery Patch

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Journal (Medicine)

Measurement of Dynamic Scapular Kinematics Using an Acromion Marker Cluster to Minimize Skin Movement Artifact

Measurement of Dynamic Scapular Kinematics Using an Acromion Marker Cluster to Minimize Skin Movement Artifact

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Journal (Medicine)

Orthotopic Injection of Breast Cancer Cells into the Mammary Fat Pad of Mice to Study Tumor Growth.

Orthotopic Injection of Breast Cancer Cells into the Mammary Fat Pad of Mice to Study Tumor Growth.

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Journal (Medicine)

Preparation and Respirometric Assessment of Mitochondria Isolated from Skeletal Muscle Tissue Obtained by Percutaneous Needle Biopsy

Preparation and Respirometric Assessment of Mitochondria Isolated from Skeletal Muscle Tissue Obtained by Percutaneous Needle Biopsy

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Journal (Medicine)

A Methodological Approach to Non-invasive Assessments of Vascular Function and Morphology

A Methodological Approach to Non-invasive Assessments of Vascular Function and Morphology

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Journal (Medicine)

Evaluating the Effectiveness of Cancer Drug Sensitization <em>In Vitro</em> and <em>In Vivo</em>

Evaluating the Effectiveness of Cancer Drug Sensitization In Vitro and In Vivo

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Journal (Medicine)

Three-dimensional Co-culture Model for Tumor-stromal Interaction

Three-dimensional Co-culture Model for Tumor-stromal Interaction

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Journal (Medicine)

Experimental Glaucoma Induced by Ocular Injection of Magnetic Microspheres

Experimental Glaucoma Induced by Ocular Injection of Magnetic Microspheres

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Journal (Medicine)

State of the Art Cranial Ultrasound Imaging in Neonates

State of the Art Cranial Ultrasound Imaging in Neonates

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Journal (Medicine)

Recording Light-evoked Postsynaptic Responses in Neurons in Dark-adapted, Mouse Retinal Slice Preparations Using Patch Clamp Techniques

Recording Light-evoked Postsynaptic Responses in Neurons in Dark-adapted, Mouse Retinal Slice Preparations Using Patch Clamp Techniques

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Journal (Neuroscience)

Laser Capture Microdissection - A Demonstration of the Isolation of Individual Dopamine Neurons and the Entire Ventral Tegmental Area

Laser Capture Microdissection - A Demonstration of the Isolation of Individual Dopamine Neurons and the Entire Ventral Tegmental Area

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Journal (Neuroscience)

Functional Evaluation of Biological Neurotoxins in Networked Cultures of Stem Cell-derived Central Nervous System Neurons

Functional Evaluation of Biological Neurotoxins in Networked Cultures of Stem Cell-derived Central Nervous System Neurons

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Journal (Neuroscience)